Gene putatively regulated by attenuation in C_tetani_E88

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:174 nt.     Distance to run of Ts=0 nt.   Size=24 nt.     Delta G=-14.70 kcal/mol
Antiterminator: Size=37 nt.     Delta G= -6.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AACTTCAGGATTAAgggatagtccaaagaaaagattgattaaaaatcaaatttaatgtaaaatgatagaggaagactaggttttttacct
agcaattaggacttaggaaaaatcctaagtccttttatataataaataataatttaataatgtaatacattagttaaaaaaatgttaataatataatgta
caataatatgatataactattattaggataaatataataaatatttctatttaaaaatcaattaatttattataaaatgtatgtagtatatgtgaaagga
aaggaataatATG

    CTC00791 --- CTC00792


Gene: CTC00791     GI: 28210508     BI number: CTC00791     GOG: COG4632     Description: conserved protein
Gene: CTC00792     GI: 28210509     BI number: CTC00792     GOG: NOG08146     Description: conserved protei



  t
t  t
t  t
 ta
 gc
 gc
 at
 ta
 cg
|  c       aa
a  a      a  a
g  a       at
 at        gc
 at        gc
|  a       at
|  g       ta
|  g       ta
g  a       cg
 gc        at
 at        gc
 gt        gc
            ttttatataataaataataatttaataatgtaatacattagttaaaaaaatgttaataatataatgtacaataatatgatataactattattaggataaatataataaatatttctatttaaaaatcaattaatttattataaaatgtatgtagtatatgtgaaaggaaaggaataatATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[G] COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase ... can be seen here

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