Gene putatively regulated by attenuation in C_tetani_E88
Characteristics of the secondary structures
Terminator: Distance to gene:201 nt. Distance to run of Ts=0 nt. Size=32 nt. Delta G=-14.80 kcal/mol
Antiterminator: Size=61 nt. Delta G= -5.99 kcal/mol
Anti-antiterminator: Size=53 nt. Delta G= -4.60 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATCAACCTAATTTTGAAAAAGTATTGGAAGCTGCTAAAAACGCTAAATAAaattaactatata
aggggcttgtatttattaatacgggctctttttattttcaaaattaaagtatttaatgctttttacgataacctttaaatagtgaataactaataatgga
caatgaataattaatgaaaattttcttcctatcgtcagaaagtctttaattttattatgtaaggcagatagttgcactatggaaaactcgtttagcgttg
ctaaacatcaattgttaattaattaaagggtgatttaATG
CTC00796
Gene: CTC00796 GI: 28210513 BI number: CTC00796 GOG: NOG12553 Description: conserved protei
AA
T a
A a
A t
aa A t
a g T a
tg C a
tg G c
at C t
a g A a
t a A t
t t A a
at A t
at A a
ta Ta
tA Cg at
gT G g t t
tG Tg ta
tA Cg ta
a G Gc at
a T At ta
c A At gc
t T G g tg
aT Gt tg
cG Ta cg
a G | t gc
a A T t gt
a | At gc
tA Ta gt
cG Gt at
gC At at
ttattttcaaaattaaagtatttaatgctttttacgataacctttaaatagtgaataactaataatggacaatgaataattaatgaaaattttcttcctatcgtcagaaagtctttaattttattatgtaaggcagatagttgcactatggaaaactcgtttagcgttgctaaacatcaattgttaattaattaaagggtgatttaATG
..................................................................................................................