Gene putatively regulated by attenuation in C_tetani_E88

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:161 nt.     Distance to run of Ts=1 nt.   Size=26 nt.     Delta G=-16.40 kcal/mol
Antiterminator: Size=60 nt.     Delta G= -6.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

tcaaatgaagaaataaaaaatataataaaagattttggatatgaagttgtaagtataaaataagctaatacctcatgaaaaaagtatatggttttaaaat
ataaatcagaggacatcttaaaagatgtcctctattttgtaaacttttgatgaatattgatgttaaatctatgttaattaaattaaaaaaatatttattt
tgtgttgaattaatgtatattaaaattagtaaaacaaaagtaaagcatgtaaacaatccataatgtttggacagtttaaattattggagggaataattat
ATG

    CTC00877


Gene: CTC00877     GI: 28210590     BI number: CTC00877     GOG: COG1283     Description: sodium-dependent phosphate transport protei



  t
t  t
t  a
g  a
g  a
 ta
 at
 ta
 at
 ta
g  a
a  a
a  |
a  |
a  |
a  |
 at
 gc
 ta
a  |
 cg
 ta        aa
 cg       t  a
 cg        ta
a  a       cg
t  c       ta
a  a       at
a  t       cg
t  |       at
c  |       gc
 gc        gc
 at        at
 at        gc
 ta        at
            attttgtaaacttttgatgaatattgatgttaaatctatgttaattaaattaaaaaaatatttattttgtgttgaattaatgtatattaaaattagtaaaacaaaagtaaagcatgtaaacaatccataatgtttggacagtttaaattattggagggaataattatATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[P] COG1283 Na+/phosphate symporter ... can be seen here

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