Gene putatively regulated by attenuation in C_tetani_E88
Characteristics of the secondary structures
Terminator: Distance to gene:203 nt. Distance to run of Ts=1 nt. Size=30 nt. Delta G= -8.20 kcal/mol
Antiterminator: Size=33 nt. Delta G= -7.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
aaaaaattatgcttaaaattaaaacatattctgaaagtaaagcaccatttgaagtatgggtatttgctatagctagaaatgtagtaaatgattattttag
aagtttaaaaaagcattgaagataaattttatatagatatagatgcttattttaatggtatagaagagttcaataacttaaattcccaagaatacaatga
aattttaaaactggcaaagactttagcagataaagtagtgagaacaatatccctgggatatataagtgttatacaataggaaagacctaaaatagaaaag
ATG
CTC00931
Gene: CTC00931 GI: 28210642 BI number: CTC00931 GOG: NOG39217 Description: conserved protei
a
g a
t g ag
t t t a
ta c a
at g a
cg at
cg tg
a g at
c t ta
g a cg
at gt
at ta
at ta
tg ta
gc at
at tg
attattttagaagtttaaaaaagcattgaagataaattttatatagatatagatgcttattttaatggtatagaagagttcaataacttaaattcccaagaatacaatgaaattttaaaactggcaaagactttagcagataaagtagtgagaacaatatccctgggatatataagtgttatacaataggaaagacctaaaatagaaaagATG
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