Gene putatively regulated by attenuation in C_tetani_E88

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:84 nt.    Distance to gene:141 nt.     Distance to run of Ts=1 nt.   Size=29 nt.     Delta G=-12.50 kcal/mol
Antiterminator:    Distance from promoter:36 nt. Size=64 nt.     Delta G= -9.90 kcal/mol
Anti-antiterminator:    Distance from promoter:6 nt.    Size=47 nt.     Delta G= -4.00 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: TTGTTT-GAAGAT. It has a score value of 61.58 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTGTTTTATCCAAAAATCCATTAGAAGATATTCACAATGTAAATACTGATAATATGGA
AATTATTATGAAAGAAGGGGCATTTATTAAAAAAGTAAATGATAAATAAcaaaacagggcttct
cttttgtttaagagagccttattttgttattgagaattatatttattataaattaaaagtatattcatataataaaaatagttgtgtatattcttaaagg
tttgtataattgatatatggactatacatttaattaatattcaacattagtctacagggggtatttttGTG

    CTC00934


Gene: CTC00934     GI: 28210645     BI number: CTC00934     GOG: COG2972     Description: two-component sensor histidine kinas


           AG
          A  T
          A  A
          A  A
          A  A
           AT
           TG
           TA
           AT
           TA
           TA
           TA
           AT
  A       |  A
G  A      |  A
G  A      |  c
T  T      |  a
 AT       |  a
 TA       |  a
 AT       |  a
 AT       |  c
 TA       |  a
 AT       |  g
|  G      |  g       gt
|  A       Cg       t  t
G  A       Gc       t  t
 TA        Gt        ta
 CG        Gt        ta
A  A       Gc        cg
T  A      A  |       ta
A  G       At        cg
A  G       Gc       t  |
A  G       At        ta
 TG        At        cg
 GC        At        gc
 TA        Gt        gc
 AT        Tg        gt
 AT        At        at
                        attttgttattgagaattatatttattataaattaaaagtatattcatataataaaaatagttgtgtatattcttaaaggtttgtataattgatatatggactatacatttaattaatattcaacattagtctacagggggtatttttGTG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain ... can be seen here

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