                                                                        Gene putatively regulated by attenuation in C_tetani_E88

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:71 nt.    Distance to gene:92 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G=-13.20 kcal/mol
Antiterminator:    Distance from promoter:69 nt. Size=18 nt.     Delta G= -3.10 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: TTGAAG-GAGGAT. It has a score value of 65.6 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTGAAGCATTAAATAATAATAGTGAGGATGAAGCTGTAGAAGCTATGACAAAGCATTT
GGACTTTGCAAATAAATACATGATAAATAGATAAtattaattagaagatgtcttttaaaaaagacatctttttta
ttttaaaatatatagcaatgttctaaaaattgtgataatatatatttaactggtactatggtatgaccagtaacattaaataaggagaggtaatATG

    CTC00972 Gene: CTC00972     GI: 28210680     BI number: CTC00972     GOG: COG1620     Description: L-lactate permeas            aa           t  a            ta            ta            ta            cg tg        ta a  t       gc gc        ta at        at at        gc gt        at at        at ta        gt ta        at             ttattttaaaatatatagcaatgttctaaaaattgtgataatatatatttaactggtactatggtatgaccagtaacattaaataaggagaggtaatATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [C] COG1620 L-lactate permease ... can be seen here     ..................................................................................................................