                                                                        Gene putatively regulated by attenuation in C_tetani_E88

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:181 nt.     Distance to run of Ts=0 nt.   Size=36 nt.     Delta G=-13.50 kcal/mol
Antiterminator: Size=59 nt.     Delta G= -5.12 kcal/mol
Anti-antiterminator:   Size=26 nt.     Delta G= -3.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AAAGTTGCAATTAATAAAGAATAATCTGTAAaatgaaattaggtaatattttaattttagaaataaagtataacaat
aaggagaataatagttaatgatttaacgattattctctttatttctattgaatctcataaaatatatataaaagctagaaattattttaaatgtgactta
taattagagtacatttatcaaataaataagatataataaaaatttacaaaatgtgaattgaaaaactttatcaagttttatataatattttcatgataat
aattatcatttacaatttattatTTG

    CTC01004 --- CTC01005 --- CTC01006 Gene: CTC01004     GI: 28210710     BI number: CTC01004     GOG: COG0426     Description: flavodoxin Gene: CTC01005     GI: 28210711     BI number: CTC01005     GOG: NOG39861     Description: hypothetical protein Gene: CTC01006     GI: 28210712     BI number: CTC01006     GOG: COG0655     Description: iron-sulfur flavoprotei            aa           g  a            at            ta            ta            ta            tg            at           |  a           |  t           |  a           |  a           |  c           |  a           |  a           |  t           |  a           |  a       ga           |  g      t  t           a  g       at            ta        at            tg        ta at        ta        ta a  a       ta        gc t  t       at       a  g gt        ta        ta gt       a  a       at at        at        at ta        ta        ta ta       g  g       at at        gt        at at        at        gc at        ta        at gt        ta        gc ta        at        gt                         ttatttctattgaatctcataaaatatatataaaagctagaaattattttaaatgtgacttataattagagtacatttatcaaataaataagatataataaaaatttacaaaatgtgaattgaaaaactttatcaagttttatataatattttcatgataataattatcatttacaatttattatTTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [C] COG0426 Uncharacterized flavoproteins ... can be seen here [R] COG0655 Multimeric flavodoxin WrbA ... can be seen here     ..................................................................................................................