                                                                        Gene putatively regulated by attenuation in C_tetani_E88

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:47 nt.    Distance to gene:172 nt.     Distance to run of Ts=0 nt.   Size=34 nt.     Delta G=-17.70 kcal/mol
Antiterminator:    Distance from promoter:27 nt. Size=37 nt.     Delta G= -4.10 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: TTAAAG-TAAAGT. It has a score value of 60.24 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTAAAGGATATGATAAGAAAGGTAAAGTTGTAGCAGAAAATCAAATAGTTCTTAAAGT
ACCGAAGTGTTAAtttatagatagttcttaggctaagctaagaactatctatttttttattttacatataactaattttatctaatattgt
cgaatagcttgtaccaaatgtagaaaagttttacaataaagaagaaaccaccgtgaatggaactaaaatggtttcttaaaaatgatggtatttcattgtt
tatacttctattatactagtatattctctgaaatacaatataATG

    CTC01113 Gene: CTC01113     GI: 28210812     BI number: CTC01113     GOG: -------     Description: hypothetical protei tt t  a A  t       ta A  a      c  a Tg       g  g Ta        gc Gt        at Ta        ta G  g       ta At        cg At        ta Gc        ta |  t       gc C  t       at C  a       ta A  g       at Tg        gc Gc        at At        ta             tttttttattttacatataactaattttatctaatattgtcgaatagcttgtaccaaatgtagaaaagttttacaataaagaagaaaccaccgtgaatggaactaaaatggtttcttaaaaatgatggtatttcattgtttatacttctattatactagtatattctctgaaatacaatataATG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in C_tetani_E88                                                                         Characteristics of the secondary structures Terminator:    Distance from promoter:48 nt.    Distance to gene:179 nt.     Distance to run of Ts=0 nt.   Size=32 nt.     Delta G=-16.40 kcal/mol Antiterminator:    Distance from promoter:15 nt. Size=37 nt.     Delta G= -4.10 kcal/mol Anti-antiterminator:   Size=56 nt.     Delta G= -5.10 kcal/mol                                                                         Nomenclature/Definitions The most likely promoter is: TTAAAG-TAAAGT. It has a score value of 60.24 and is shown in blue Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case TTAAAGGATATGATAAGAAAGGTAAAGTTGTAGCAGAAAATCAAATAGTTCTTAAAGT ACCGAAGTGTTAAtttatagatagttcttaggctaagctaagaactatctatttttttattttacatataactaattttatctaatattgt cgaatagcttgtaccaaatgtagaaaagttttacaataaagaagaaaccaccgtgaatggaactaaaatggtttcttaaaaatgatggtatttcattgtt tatacttctattatactagtatattctctgaaatacaatataATG     CTC01113 Gene: CTC01113     GI: 28210812     BI number: CTC01113     GOG: -------     Description: hypothetical protei   C G  A A  G T  A G  A TA TA GT A  C A  A A  A       CG TA       C  A GT       A  A G  A      T  G       ta A  G       GT       c  a AT        AG       g  g AT        AT        gc GC        AT        at AT       T  A       ta AT        TA        ta TA        Ct        cg A  A       Tt        ta G  A      |  t       ta TG       T  a       gc AT       G  t       at TA       A  a       ta A  |       Tg        at GC        Aa        gc GC        At        at                         atttttttattttacatataactaattttatctaatattgtcgaatagcttgtaccaaatgtagaaaagttttacaataaagaagaaaccaccgtgaatggaactaaaatggtttcttaaaaatgatggtatttcattgtttatacttctattatactagtatattctctgaaatacaatataATG     ..................................................................................................................