Gene putatively regulated by attenuation in C_tetani_E88
Characteristics of the secondary structures
Terminator: Distance to gene:72 nt. Distance to run of Ts=0 nt. Size=40 nt. Delta G=-21.10 kcal/mol
Antiterminator: Size=68 nt. Delta G= -4.71 kcal/mol
Anti-antiterminator: Size=79 nt. Delta G= -6.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GCATGGTGGTAGAAGGTATAAAAGCTTGTAAAGCCTTTTATGAATTAAAGGAAAAGTT
AAAAGTATCTATGCCCATAACGGATGCTTTATATAGAGTTCTATTTCAAGGGGAAGAT
GCTAAATACTGTGTATATGAATTGATGACTAGAGACAAAAAAGATGAATAAatttaatctta
tattttaaagtaatctgtagaaattaaaatttctacagattactttttttatatgtaatatttaagggggaagcaaaatatatatatactgttaatatta
gtttataggagggtaagtaaacTTG
CTC01140
Gene: CTC01140 GI: 28210833 BI number: CTC01140 GOG: NOG05030 Description: stage IV sporulation protein
AT
A A
A C
T T A
CG A a
GT T t
TG A t
AT A t
G A G a
A T Ta
A A At
G T Gc
G G At
G A At
G A | a
AT | t
AT | a
CG | t
TA | t
| T | t
| G | t
T A | a
T C | a aa
AT A a t a
TA A g ta
CG A t at
TA A a at
TG C a at
| A At gc
| C Gc at
| A At ta
G A G g gc
A A At ta
G A Ta cg
A A Cg ta
T A A a at
A G G a at
TA Ta ta
AT At gc
TG Gt at
TA Ta at
TA Ta at
ttttatatgtaatatttaagggggaagcaaaatatatatatactgttaatattagtttataggagggtaagtaaacTTG
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