                                                                        Gene putatively regulated by attenuation in C_tetani_E88

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:37 nt.     Distance to run of Ts=0 nt.   Size=21 nt.     Delta G=-11.00 kcal/mol
Antiterminator: Size=45 nt.     Delta G= -7.60 kcal/mol
Anti-antiterminator:   Size=33 nt.     Delta G= -5.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ttagtagattatagacaaccacttaaaatatttcaatgggcatttgcattatttcaagtagataaatttcaagaaaaagaagttgaagtaataggctggt
ataaaagaggtatgagaccttattttgtatgtaaatatataaagagatatgatgataaatatcaatgctataactatatgttaactaaaatagtggcctt
tggtcttgtaattttaggattatgtataaaatttatttagggctaaattttagccctatttttctaagtagatatattaataataggagttatttatagt
ATG

    CTC01165 Gene: CTC01165     GI: 28210857     BI number: CTC01165     GOG: NOG41519     Description: membrane associated protei            ta           t  t           a  g           g  t           g  a            at   t        ta t  t       ta cg        ta cg        ta gt        at gc        at |  t      |  t |  t      |  a        t t  g      |  t      a  t g  t      t  t       at a  a       gt        at ta        ta        ta at        tg        cg at        cg        gc at        tg        gc at        gc        gc ta        gt        at cg        ta        ta                         tttttctaagtagatatattaataataggagttatttatagtATG     ..................................................................................................................