Gene putatively regulated by attenuation in C_diphtheriae
Characteristics of the secondary structures
Terminator: Distance to gene:111 nt. Distance to run of Ts=0 nt. Size=25 nt. Delta G= -8.90 kcal/mol
Antiterminator: Size=45 nt. Delta G=-16.70 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
aaaataattcgaaaaatgacgcggtcgaataaaaaaatttttctcggattcttgcacctagggtcggctgcacgcgtgctgatcgcttacaaatctttaa
aacactcttgaaatgagaatgattatccgtatggtgtgtggtgtccggccggacgaaccacagagccttagaccaaaaggctgtgtttttccattcaatc
gataccgatctttctatttgagaggggaatctctttgtctcgtagcaagaacgcactaattcgaaatctttcgattgccgcaggagcggcagcaataagc
GTG
DIP0013
Gene: DIP0013 GI: 38232655 BI number: DIP0013 GOG: ------- Description: Hypothetical protei
gc
g c
cg
cg
ta
gc
| g
| a
ta
gc
gc
ta
gc c
ta a c
| g g a
g a a a
tg ta
gc ta
gc cg
| t cg
| t gc
t a at
a g g g
ta at
gc cg
tttttccattcaatcgataccgatctttctatttgagaggggaatctctttgtctcgtagcaagaacgcactaattcgaaatctttcgattgccgcaggagcggcagcaataagcGTG
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