Gene putatively regulated by attenuation in C_diphtheriae
Characteristics of the secondary structures
Terminator: Distance to gene:70 nt. Distance to run of Ts=1 nt. Size=36 nt. Delta G=-13.50 kcal/mol
Antiterminator: Size=31 nt. Delta G=-19.40 kcal/mol
Anti-antiterminator: Size=51 nt. Delta G=-20.70 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
gcagcgcccggcggggaatcttcatcaaatcttcaaacatcacccttcgaccgccatcacccttgtgccccaccccgggccggcggcatcgcctccccta
gtcggttcagcaggcgccaccagggatttcactgcctgtaccgcatacccggggcgggtagaaggacatcgcccacggctgtggagtggtgtcccggtgg
tgacccagcccaccgaactcacccctttttcgccctgttataaggctgtgagcagggtttttgatttctactccgtcaggcacccgtgcaagatacaggt
ATG
DIP0066
Gene: DIP0066 GI: 38232700 BI number: DIP0066 GOG: NOG06665 Description: Putative exported protei
ta
a c
c c
gc
cg
cg
a g
t g
gc c
tg c c
cg a a
cg gc g g
gt g t t c
ta cg gc
cg at gc
| a cg ta
| a cg gc
a g | a gc
cg cg cg
ta gt | a
t c cg c a
ta tg c c
at at t t
gc cg gc
| g at ta
gc gc gc
gc gc gc
cctttttcgccctgttataaggctgtgagcagggtttttgatttctactccgtcaggcacccgtgcaagatacaggtATG
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