Gene putatively regulated by attenuation in C_diphtheriae
Characteristics of the secondary structures
Terminator: Distance to gene:173 nt. Distance to run of Ts=0 nt. Size=29 nt. Delta G=-18.80 kcal/mol
Antiterminator: Size=42 nt. Delta G=-11.90 kcal/mol
Anti-antiterminator: Size=20 nt. Delta G= -6.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
caacaacaagctGCGCCCGTAGCTCAACGGATAGAGCATCTGACTACGGATCAGAAGGTTGGG
GGTTCGAATCCCTCCGGGCGCAcaagtgaaaccccagctcatagcatgtttgagctggggtttcttcatgatgtgtgggttgtc
tgactgttggctgttgttgcaggtggttggtgctcgtaccgaacgcataccgaacataggccgaacagaaaccgaacaagagtcgaacgggcaccgaacg
gggtaattcccatagatcagtttctgcgtcccttgtaggtaagatgatcacttATG
DIP0179
Gene: DIP0180 GI: 38232805 BI number: DIP0180 GOG: ------- Description: Hypothetical protei
C
T C
CG
CG
CG
| C
| G
| C
| A
| c a
T a c t
A a g g
A g a t
Gt t t
GA Cg at
C A Ta cg
T T Ta ta
T C G a cg
GC Gc gc
GC Gc at
GT Gc cg
GC Gc cg
GC Ta cg
TG Tg cg
tttcttcatgatgtgtgggttgtctgactgttggctgttgttgcaggtggttggtgctcgtaccgaacgcataccgaacataggccgaacagaaaccgaacaagagtcgaacgggcaccgaacggggtaattcccatagatcagtttctgcgtcccttgtaggtaagatgatcacttATG
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