Gene putatively regulated by attenuation in C_diphtheriae
Characteristics of the secondary structures
Terminator: Distance to gene:157 nt. Distance to run of Ts=0 nt. Size=35 nt. Delta G=-10.14 kcal/mol
Antiterminator: Size=45 nt. Delta G=-13.00 kcal/mol
Anti-antiterminator: Size=55 nt. Delta G=-18.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AGGCGCCGGCGATTGAAGCTGCCTTGCGTACCGGTGTGGCGACCCATGTGGTGATTGA
TCATGCTACGGCGCAGCGCGTGGTAGAGATGGCGTAGtgaagatgtggcgctgttaatgcggtcgaatactag
tgccatttttatttccccctgtgtttgattggctgattttgagtgtagtcatagtgctataacatgcgctagcccctactgctacccctttttgttcgaa
tgctctttcggatgtcaagtccctgcgatacactcgcaaccaccatgaacaaccagggggctacacatcATG
DIP0268
Gene: DIP0268 GI: 38232891 BI number: DIP0268 GOG: ------- Description: Conserved hypothetical protei
GA
T T
T C
A A GA
G T A G
TG TA
GC GT
GT G G
TA TG
GC GC
T | CG
A | GT
C | | A gg
CG | G c t
CG | t g c
A | | g t g
GC | a a a
CG | a a a
GC | g t t
G A | a ta
TG | t gc
GC Cg | t
TG Gt ta
GC A g cg
| G Cg gt
GT Gc cg
CG Cg gc
CG Gc gc
AT Gt ta
TA Cg gt
ttttatttccccctgtgtttgattggctgattttgagtgtagtcatagtgctataacatgcgctagcccctactgctacccctttttgttcgaatgctctttcggatgtcaagtccctgcgatacactcgcaaccaccatgaacaaccagggggctacacatcATG
..................................................................................................................