                                                                        Gene putatively regulated by attenuation in C_diphtheriae

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:111 nt.     Distance to run of Ts=1 nt.   Size=39 nt.     Delta G=-14.80 kcal/mol
Antiterminator: Size=40 nt.     Delta G=-10.70 kcal/mol
Anti-antiterminator:   Size=39 nt.     Delta G=-10.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TGGCGGCGTCGATAGGCGTTGTTATGTCGGTGCTGTTTTTGCTTGGGTTCCTTGGGTT
GTTTGCGTGGTTTGTTGCTGCGTTTCGCCAGGGTGGGCGGTTTGCGCAGCTGTGTCGC
AAGACGATGACGTTTGTGTCAATATATTTGGGCATTAGCGTGATTACGGTGTTTGCGA
TTGTGCCCACTTCTTTGTCGATTCCGCAGGGCTGGTTTTTGGCTGATGGTTGTTTGTC
CATTGCTTGTGGCGTGGCGGCGATCATtggtttgatttttgcgcagaagaaggagtcgctggagtgggGTG

    DIP0405 Gene: DIP0405     GI: 38233019     BI number: DIP0405     GOG: -------     Description: Putative cation transport protei CA G  A CG        TA         G TA       A  T      C  G GC       T  T      A  T |  G      A  T      T  G |  A      A  G      T  T |  T       CG        AT |  G       TG        GT TA        GC        TG GC        TA        GC TG        GT        CG C  T      T  T      G  A GT        TA       A  T AT        TG       T  T CG        GC        TG GT        CG        AT CG        AT        CG |  T      G  G       GC GC        TA        GC TA        AT        GC TA        GT        TA                         CTTCTTTGTCGATTCCGCAGGGCTGGTTTTTGGCTGATGGTTGTTTGTCCATTGCTTGTGGCGTGGCGGCGATCATtggtttgatttttgcgcagaagaaggagtcgctggagtgggGTG     ..................................................................................................................