Gene putatively regulated by attenuation in C_diphtheriae
Characteristics of the secondary structures
Terminator: Distance to gene:149 nt. Distance to run of Ts=2 nt. Size=33 nt. Delta G= -8.80 kcal/mol
Antiterminator: Size=36 nt. Delta G= -9.60 kcal/mol
Anti-antiterminator: Size=18 nt. Delta G= -6.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CCTATATTTTGCTTCCCGACGTTTTTGTAGCTATTGAGGTGGGTGAAACAATTGGATG
GTTTGACCCCGCATATTGGAGCCGTGAGGAGTTCCTGGAGGAAGCCATACTCGCTTAA
cctgcataaccgcgtgcacgcgaggatatttttatagtcccttcaccctcaatgcctgcgccgttgctctagccaacgtaggtcaccaagtctacttaag
tacaccaccgtggggcgccacaaggagattgacaatctcatggctcgtaaaatctacaagcaaatcggaatggaacagtaggacATG
DIP0455
Gene: DIP0455 GI: 38233067 BI number: DIP0455 GOG: ------- Description: Conserved hypothetical protei
GG cc
T A a g
CG a c
CG tg
TA at
TA cg
G G gc
A | ta
GC c c
TG GC c |
G A A A A |
CG GT A |
CG TA T |
| A GC T |
| G | T Cg
G T C C Gc
AT CG Cg
GC GC Ta
GC AT Cg
gatatttttatagtcccttcaccctcaatgcctgcgccgttgctctagccaacgtaggtcaccaagtctacttaagtacaccaccgtggggcgccacaaggagattgacaatctcatggctcgtaaaatctacaagcaaatcggaatggaacagtaggacATG
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