                                                                        Gene putatively regulated by attenuation in C_diphtheriae

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:147 nt.     Distance to run of Ts=3 nt.   Size=24 nt.     Delta G= -9.20 kcal/mol
Antiterminator: Size=49 nt.     Delta G=-10.10 kcal/mol
Anti-antiterminator:   Size=37 nt.     Delta G=-17.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GTCCTCGCTAAGCGTGGTGGGAAAATCGTCGAGGTAGGCGCGAAGAACTGCGATGGTG
TCGGAGGGGGTGCTGTCCCAATCGAGGCCATGATTGCACAGGATGTCGAGGATTGCGA
CGAGGCTGAGGTTTGGTTGGCCTTGCCAGATATTTTCGACAAGCCGCAGGATGGTGGG
GATGGTGGTGGGGTCGGGGGAAGTCACTCTTATCAGTGTAGGGGGTAGTGGGGGTGTG
AGCCTATACACtgttgcgtgtgcttgcgcagtggggtcacgtagtagtgtgctgggcagtagttaagaGTG

    DIP0597 Gene: DIP0597     GI: 38233204     BI number: DIP0597     GOG: -------     Description: Hypothetical protei             A           G  T           G  T           A  G            GC            CG            TA            GC   C        TG G  T      |  A T  G      A  G GT       G  G GC        GC GC        AT GC        CG         G G  A      A  A      G  T A  A      C  |      T  T GT       G  |       TG GC        TG        TG CG        TG        GC TA        AT        GC G  G       GT        AT TG       T  |       GT GC        AT       T  | GC        CG        CG TA        CG        GC AT        GT        GC                         AGATATTTTCGACAAGCCGCAGGATGGTGGGGATGGTGGTGGGGTCGGGGGAAGTCACTCTTATCAGTGTAGGGGGTAGTGGGGGTGTGAGCCTATACACtgttgcgtgtgcttgcgcagtggggtcacgtagtagtgtgctgggcagtagttaagaGTG     ..................................................................................................................