Gene putatively regulated by attenuation in C_diphtheriae
Characteristics of the secondary structures
Terminator: Distance to gene:80 nt. Distance to run of Ts=0 nt. Size=29 nt. Delta G= -8.00 kcal/mol
Antiterminator: Size=47 nt. Delta G=-11.30 kcal/mol
Anti-antiterminator: Size=20 nt. Delta G= -4.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttatcgacgttccccatgtccgcactcatcccctagatataaggatgagcttgtagtttgtgtgttgttgattactccttagtgtgttctatcccctagg
agtgagatgtttaatagcatcagctttgaggcgctcactcagtaaaagccggtatgtctagcgtggccgcactgccaagctcctcggatgttgtatcgcg
gtatattcgcgtcctattttgtggctgatttcttatgcgcgaaggcggttgttctttgcagaaggaagattcccacataacaccccgaaaggttcataaa
TTG
DIP0651
Gene: DIP0651 GI: 38233258 BI number: DIP0651 GOG: NOG10391 Description: Conserved hypothetical protei
ca
g c
c t
cg
gc
gc
ta
g a
cg
gc
at
| c gc
| c c g
| t tg
| c at
tg ta
t cg gt
c a ta ta
t g gt | t
gc | g | t
tg | t | c
at | t tg
| g tg gc
tg at tg
gc ta at
gc gt gc
cg gc gc
tattttgtggctgatttcttatgcgcgaaggcggttgttctttgcagaaggaagattcccacataacaccccgaaaggttcataaaTTG
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