                                                                        Gene putatively regulated by attenuation in C_diphtheriae

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:203 nt.     Distance to run of Ts=3 nt.   Size=29 nt.     Delta G= -8.50 kcal/mol
Antiterminator: Size=37 nt.     Delta G=-13.30 kcal/mol
Anti-antiterminator:   Size=31 nt.     Delta G= -5.00 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CCGATGAGCTCTGCGGGAACCAACGCGAACAGGGTAGGGGGAGCATCCCAACCTTCTG
CGTGGATGAAGTCAACGGCTTCGAGCATGGCCTTATTTAACGCCTGAGGTGGGTACTG
CATGCCACTCATatcaattccttcgcaatcacgtgacggcaaactatcgtaaagtaggacattacctttgctggctcagaaaggtggcacc
tgggttgccaagaatgtgcagttttaaggctgcctgctcggcaacgctatggtggacaaaacctaactgaaaaataatttaaggagttccaagTTG

    DIP0733 Gene: DIP0733     GI: 38233339     BI number: DIP0733     GOG: COG1615     Description: Putative membrane protei             G           A  C   C       G  A A  A       GT A  G       GC         A G  G       GC       A  C CG        GC       C  G GT       A  A       TG G  A       TA        GC T  G       GC        AT T  G       GC        AT g  G       GT        GC a  |       AT        TG a  |      C  C      A  A cG       A  T      G  G cG       A  G       GC tA        GC        TA tG        CG        GT gC        GT        CG                         GCCTTATTTAACGCCTGAGGTGGGTACTGCATGCCACTCATatcaattccttcgcaatcacgtgacggcaaactatcgtaaagtaggacattacctttgctggctcagaaaggtggcacctgggttgccaagaatgtgcagttttaaggctgcctgctcggcaacgctatggtggacaaaacctaactgaaaaataatttaaggagttccaagTTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [S] COG1615 Uncharacterized conserved protein ... can be seen here     ..................................................................................................................