Gene putatively regulated by attenuation in C_diphtheriae
Characteristics of the secondary structures
Terminator: Distance to gene:196 nt. Distance to run of Ts=2 nt. Size=23 nt. Delta G= -7.10 kcal/mol
Antiterminator: Size=48 nt. Delta G= -8.00 kcal/mol
Anti-antiterminator: Size=25 nt. Delta G= -4.40 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
atcgaacgtcacacaccacacatggaaccgactatccataccggacaacagcctgcacaggccgtacaccatcccgtcctcatgatcgagaggtggagtt
ttctcggctatctgctcgttcggttcgatgactctaccaaatgagtccttggacagtccctcgaccagtgccgcaatagcatgggcagtattgcgggaaa
gacccagcccacgctgctcgtggtatgtcccccacggtggctgggcggccttgtgaatcaccgtgtccaggatgtgccgtgacgttacgaaagtcatcgg
GTG
DIP0801
Gene: DIP0801 GI: 38233400 BI number: DIP0801 GOG: ------- Description: Hypothetical protei
ca
g c
ta
cg
cg
gc
a c
cg
at
| a
| c
| a
| c
| c
a | a
a c | t
c a | c
a g | c at
gc a c g c
gc cg t g
c | at a a
c | gc cg
a | gc ta
t | c t cg
at c c cg
cg a | t |
Gc ta gt
Ta at cg
Gc cg cg
agttttctcggctatctgctcgttcggttcgatgactctaccaaatgagtccttggacagtccctcgaccagtgccgcaatagcatgggcagtattgcgggaaagacccagcccacgctgctcgtggtatgtcccccacggtggctgggcggccttgtgaatcaccgtgtccaggatgtgccgtgacgttacgaaagtcatcggGTG
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