                                                                        Gene putatively regulated by attenuation in C_diphtheriae

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:34 nt.     Distance to run of Ts=3 nt.   Size=30 nt.     Delta G=-10.70 kcal/mol
Antiterminator: Size=42 nt.     Delta G=-25.70 kcal/mol
Anti-antiterminator:   Size=55 nt.     Delta G=-20.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CCGCCCGTCAGCCACGCCACCGCTGCGTGGCTGGTGATAGCGGTGTAGTCAGTTTCGG
TGATGCGTACCGAGGACAGGGTATCGGCCAAGGTCAGGACACCTTCCTGGGAAATGCG
GGCTTGGTACCGGCTGGTGAGCAGTGGATTGGTCTGGCTCACGCCGGTTAGTAGCATG
TCCCCGATTCCTGGTTCGTAGGTGGGGACGAGCTGGGTGGCTGAGCTGTAGATCGGTC
CTGCCCAGCTCGCGTGGCAGGCGAGGATGTTTTCGACGCGCAGGGCCTGCACGTCGCA
GTAGTGGGTCATG

    DIP0813 --- DIP0816 --- DIP0817 Gene: DIP0813     GI: 38233412     BI number: DIP0813     GOG: -------     Description: Hypothetical protein Gene: DIP0816     GI: 38233413     BI number: DIP0816     GOG: -------     Description: Putative exported protein Gene: DIP0817     GI: 38233414     BI number: DIP0817     GOG: -------     Description: Putative phage integras   T T  C G  G GT TA CG CG T  | T  | A  | GT        GT CG       T  A CG       C  G CG       G  A CG        AT TA        GC        CG GC        TG       T  C TG        CG        CG A  A       GT        GT CG        GC       A  | GC       |  C      C  | AT       |  T       CG |  G       TG        CG |  G       GC        GC |  G       GC        TA |  T       GC        CG |  G       TA        CG TG        CG       T  | GC        GC       G  | AT        AT        GC TG        GC        CG TA        CG        TA                         GGATGTTTTCGACGCGCAGGGCCTGCACGTCGCAGTAGTGGGTCATG     ..................................................................................................................