                                                                        Gene putatively regulated by attenuation in C_diphtheriae

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:32 nt.     Distance to run of Ts=0 nt.   Size=14 nt.     Delta G= -8.20 kcal/mol
Antiterminator: Size=12 nt.     Delta G= -4.60 kcal/mol
Anti-antiterminator:   Size=54 nt.     Delta G=-21.00 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ACGGCCCACACCCCGCTCCAGCTTGTCGATGGTGTCGAAGCGGGGGATAACCTCACCG
CGCAGGATGCGCCCGAGCGTGGCGTGGGAGATACCGATGTTGTCACAGAACTCGGAGG
GACTGGTCACGGGGCGCATCCTGCCGTCACCGATGACAGCCCGCTCCAGGTTCTGTAC
GAAGATTTGGAGACGGACCATGTCGGGTTCCATACCAGCCGTGTTGGCCCACGGCCAC
CGGCGATAGAGGTCCCTCGGGGCGACAGCCCTTTTCTTGGAAGTCATATCAATCACag
tggccgtcccATG

    DIP0819 --- DIP0820 Gene: DIP0819     GI: 38233416     BI number: DIP0819     GOG: -------     Description: Hypothetical protein Gene: DIP0820     GI: 38233417     BI number: DIP0820     GOG: -------     Description: Hypothetical protei   A C  C CG CG GC GC T  | TA GC T  | GC CG CG GC A  G C  A C  T A  A T  G A  A CG CG T  T                 AC T  C       TC       G  A GC       C  G       CG GC        CG        GC |  T       CG        GC GC        TG        GC CG        GC        GT                         TTTCTTGGAAGTCATATCAATCACagtggccgtcccATG     ..................................................................................................................