                                                                        Gene putatively regulated by attenuation in C_diphtheriae

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:205 nt.     Distance to run of Ts=1 nt.   Size=26 nt.     Delta G=-12.50 kcal/mol
Antiterminator: Size=24 nt.     Delta G= -4.10 kcal/mol
Anti-antiterminator:   Size=33 nt.     Delta G= -5.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ATGTACCTTACGGGTGCACGCCACTTCGCTCACTAAtttcttatcaacacgccacgatgtacgactgcaccgt
ggcgtgttttcttgtgcttttatgggctgctttctgggcaacgatgggggtaacctttattaatctcacaattaatctcacagatttgcgtagcagaact
gctaaaattcagcgcgttcaattattcaattagcgatgcctcttggtcaccggtagggctataaagtgcccacaaaacgcaggtgatcgcgtacttccgc
ttccgtttctcagaggactctacggccGTG

    DIP0840 Gene: DIP0840     GI: 38233437     BI number: DIP0840     GOG: -------     Description: Putative membrane protei ag c  a tg cg ta |  c       GT        ga |  t      c  G      c  c |  c       cg        at t  t       gc        tg ta        gc        gc gc       c  a       ta cg       a  c      a  c cg       t  |       gc t  c       cg        cg t  c       ta        at cG       |  t       cg gT        cg        cg cG        at        gc                         gtgttttcttgtgcttttatgggctgctttctgggcaacgatgggggtaacctttattaatctcacaattaatctcacagatttgcgtagcagaactgctaaaattcagcgcgttcaattattcaattagcgatgcctcttggtcaccggtagggctataaagtgcccacaaaacgcaggtgatcgcgtacttccgcttccgtttctcagaggactctacggccGTG     ..................................................................................................................