Gene putatively regulated by attenuation in C_diphtheriae
Characteristics of the secondary structures
Terminator: Distance to gene:140 nt. Distance to run of Ts=0 nt. Size=29 nt. Delta G=-12.10 kcal/mol
Antiterminator: Size=25 nt. Delta G= -9.90 kcal/mol
Anti-antiterminator: Size=54 nt. Delta G=-14.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CGGAGTCCAATAGTGCGAATCTTGCGGCGTAGAACATttaagagagtctacaagccacctcccctccgtggag
aatggatgactgagtgctcgttgaaggcgacagctgccaccgccacggctgcgggggtaagaaaaatcgactcctaccccctttttattaacccattctt
gagataatgcacgttttggatggaaactcactagcattgtgggggtatgtaagcgcgtaccactgccctacgcatgcttcgatgtactccccctttgtaa
aaccgacataaggaacacacgattctcATG
DIP0892
Gene: DIP0892 GI: 38233488 BI number: DIP0892 GOG: ------- Description: Putative glyceraldehyde-3-phosphate dehydrogenas
t
t g
g a
c a
tg
cg
gc
tg
g a
a |
gc
ta
cg
a c
g t t
t g a c
a | g a g
gc c g a a
gc a c a c
ta c t at
a c cg gc
a c gc a c
g g cg at
a | cg ta
gc a g gc
gc cg gc
ta cg gc
gc gt gc
cg ta gc
tttttattaacccattcttgagataatgcacgttttggatggaaactcactagcattgtgggggtatgtaagcgcgtaccactgccctacgcatgcttcgatgtactccccctttgtaaaaccgacataaggaacacacgattctcATG
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