Gene putatively regulated by attenuation in C_diphtheriae
Characteristics of the secondary structures
Terminator: Distance to gene:70 nt. Distance to run of Ts=0 nt. Size=31 nt. Delta G=-22.80 kcal/mol
Antiterminator: Size=75 nt. Delta G=-13.73 kcal/mol
Anti-antiterminator: Size=45 nt. Delta G= -8.10 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CGCGAACGCCTCTCCCAGTGCGGCGCCAAGGAAGTCATCACCACCGACACTCTGCCAC
AGTCCACCGAAGGCTGGGACAACCTCACCGTCTTGTCCATCGCACCACTGCTGGCAAA
GACCATCCACGAAATTTTCGAAAACGGCTCTGTGACCACCCTCTTCGAGGGCCAAGCT
TAAcctctcacggaacacacaatcccgcgcgcgagcacctcgcacgcgggatttttctcactccacccacccatcatgagacaataaacaactgcaca
gtttccccacgggaaggagaaccccaccATG
DIP0902
Gene: DIP0902 GI: 38233498 BI number: DIP0902 GOG: ------- Description: Putative hydrolas
T
T C
CG
TA
CG
CG
CG
| C
| C
| A
| A
| G
| C
| T
| T
| A
| A
| c
A c
C t
C c
At
Gc
Ta
T Gc
A T Tg
AT Cg
AT Ta
GC | a
CG | c
A A | a
C A | c
C A | a a
T A | c c c
A C | a gc
CG | a at
CG | t gc
| C C c cg
AT Gc gc
GC Gc c a
AT Cg gc
A G A c cg
AT A g gc
CG A c cg
| A A g cg
GC Gc cg
GC Cg ta
TA Ta at
ttttctcactccacccacccatcatgagacaataaacaactgcacagtttccccacgggaaggagaaccccaccATG
..................................................................................................................