Gene putatively regulated by attenuation in C_diphtheriae
Characteristics of the secondary structures
Terminator: Distance to gene:141 nt. Distance to run of Ts=0 nt. Size=15 nt. Delta G= -8.00 kcal/mol
Antiterminator: Size=32 nt. Delta G=-13.30 kcal/mol
Anti-antiterminator: Size=48 nt. Delta G=-18.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GTCGACGTGCGCTCCTCATGCGCGCGCTTATCGACGCCGGCTTTACCGTCGAACACTC
CGAAGCCGGTCTGTACCTGTGGGCCACCCGCGGCGAAAACTGCCGTGCCACCGTCGAC
TGGTTTGCCTCTCATGGCATCTTGGTCGCCCCCGGCGACTTTTATGGCCCCGACGCCC
ACAACTTCGTGCGCGTCGCTCTGACCACCACTGATGACAATGCCGAAAAAGTGGCGGC
CCGCCTCCAAAAGGGGAATTAGttaccagaaggtcgtcctccacgatgtcgtccccgaaggcgagtacGTG
DIP0975 --- DIP0976
Gene: DIP0975 GI: 38233570 BI number: DIP0975 GOG: ------- Description: Putative RNA pseudouridylate synthase family protein
Gene: DIP0976 GI: 38233571 BI number: DIP0976 GOG: ------- Description: Putative membrane protei
A
A A
A C
GT
CG
GC
GC
CG
GT
CG TC
| C C A
C C T T
C A CG
A C CG
C C GC
CG TA
GT T T
GC T C C
G G GT C C
TA GT CG
GC TG CG
T T CG GC
CG AT CG
CG GC TA
AT CG GC
TTTTATGGCCCCGACGCCCACAACTTCGTGCGCGTCGCTCTGACCACCACTGATGACAATGCCGAAAAAGTGGCGGCCCGCCTCCAAAAGGGGAATTAGttaccagaaggtcgtcctccacgatgtcgtccccgaaggcgagtacGTG
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