Gene putatively regulated by attenuation in C_diphtheriae
Characteristics of the secondary structures
Terminator: Distance from promoter:35 nt. Distance to gene:66 nt. Distance to run of Ts=3 nt. Size=35 nt. Delta G=-23.20 kcal/mol
Antiterminator: Distance from promoter:26 nt. Size=22 nt. Delta G= -5.20 kcal/mol
Anti-antiterminator: Size=52 nt. Delta G= -8.40 kcal/mol
Nomenclature/Definitions
The most likely promoter is: CTGATT-TAAaat. It has a score value of 70.28 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CTGATTATGAATTCTGGCTTGTTGTAAaattttgccttcgcaaagtatagatgcgttcgtgaggtccccttcccatgatt
gagagatttatggggaggggttatgtttttggcggctttgaactgctccccataatccggactgagaaatcagaaaccagattgtggggagtttctctAT
G
DIP1518
Gene: DIP1518 GI: 38234097 BI number: DIP1518 GOG: ------- Description: Putative insertion element DNA-binding protei
tt
c c
cg
gc
ta
ta
ta
tg
at
a a ag
A t g a
A a tg
T g ta
G a | t
T t at
Tg c gt
Gc c c ta
Tg c t at
| t t t cg
| t gc cg
T c gc cg
Cg a | tg
Gt gc ta
G g ta cg
Ta gt cg
Cg cg cg
Tg ta cg
ttatgtttttggcggctttgaactgctccccataatccggactgagaaatcagaaaccagattgtggggagtttctctATG
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