Gene putatively regulated by attenuation in C_diphtheriae
Characteristics of the secondary structures
Terminator: Distance to gene:177 nt. Distance to run of Ts=0 nt. Size=27 nt. Delta G= -8.90 kcal/mol
Antiterminator: Size=31 nt. Delta G= -6.50 kcal/mol
Anti-antiterminator: Size=53 nt. Delta G=-10.40 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GGTCGCAGATGCGATGCTTGCACAAGGTGTCATCTAAgttctgttaacgggtgcagtggccccctctagtaat
agtcgtgtgatgtctagtgacttcttggactcggagtccagttagttttttgacgcggagtccaggaagtttatggacatgacactctagtactagtcgg
tcgaaaaaattgactagtgtcagaggggtctttttgttgcacctaataagaggtagaactctataaaggggcaacacgcgccgatattaacaagcgacac
aacagttacttggttaccatgtttatcATG
DIP1546
Gene: DIP1546 GI: 38234121 BI number: DIP1546 GOG: ------- Description: Conserved hypothetical protei
gt
a g
cg
gc
t c
gc
gc
gc
| t
| c
| t
c a
a g ag
at t t
ta cg g
ta ta c g
gt gc t a
ta t t cg
cg at at
t t gc gc
t c t t gc
g g g t ta
A t t g tg
A g g | c t
T t cg t t
Cg ta ta
Ta gc cg
At at at
tttttgacgcggagtccaggaagtttatggacatgacactctagtactagtcggtcgaaaaaattgactagtgtcagaggggtctttttgttgcacctaataagaggtagaactctataaaggggcaacacgcgccgatattaacaagcgacacaacagttacttggttaccatgtttatcATG
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