Gene putatively regulated by attenuation in C_diphtheriae
Characteristics of the secondary structures
Terminator: Distance to gene:52 nt. Distance to run of Ts=2 nt. Size=27 nt. Delta G=-16.70 kcal/mol
Antiterminator: Size=46 nt. Delta G= -7.10 kcal/mol
Anti-antiterminator: Size=37 nt. Delta G= -6.70 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TCTGGCTTATTAGTTGGTGGAGCTTGGGCCGCATATAAAGCCGATAACAAGTTCATGG
TGATTGTTCTCGGAGTTCTCGCTGCAATGGCTGCAGCAGGTGGCGTCGTGTGGGCGGT
AGGTATCTATCAGTAGccagtaggctgtagtagggggactcggttgacttttatatacctcgcgctaggctcgaagtagcgataaaaa
tttgttaaggctgggaagtaacttctcagcctttctattttgttcccccatactcaatagtcctttaatcctcgtcgacctctaaggaaggagcctGTG
DIP1562
Gene: DIP1562 GI: 38234137 BI number: DIP1562 GOG: ------- Description: Putative transport membrane protei
a
a a
a a
t t
at
gt
cg
a gt
t g at
cg ta
gc g |
c t a |
gc a |
cg g | a
ta c | t a
c a ta gc
cg cg at
at g g at
ta gc gc
| g at gt
| c tg gc
a g cg ta
ta | g cg
at | a gc
ta g a gc
ta cg at
ta gt at
tctattttgttcccccatactcaatagtcctttaatcctcgtcgacctctaaggaaggagcctGTG
..................................................................................................................