Gene putatively regulated by attenuation in C_diphtheriae
Characteristics of the secondary structures
Terminator: Distance to gene:202 nt. Distance to run of Ts=3 nt. Size=31 nt. Delta G=-15.50 kcal/mol
Antiterminator: Size=39 nt. Delta G= -3.50 kcal/mol
Anti-antiterminator: Size=36 nt. Delta G= -7.00 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
tggcataggggagtgctgtgctcgcagctcacgcagcaccagcctcatcgacgcattggaagagcccctaaacgggggtattccgaaggatttttctccg
aacttcacaccaaatcgcttccaaaccggccgtttgagcagatttggtgtgaagtgccgtctttttcgggggtgaacgggggtggcgcgctcaccaacgc
ccaccagccatcaacacatcggtgggagcagcaagaaaacgaagggtaacgtgaggggagcgtgtagttatgcaatcgaaaataccggaggtacaagcac
ATG
DIP1921
Gene: DIP1921 GI: 38234488 BI number: DIP1921 GOG: NOG06582 Description: Conserved hypothetical protei
t
a c
cg
ta
ca c c
t c cg
cg gc
gc | a
G a | t aa
T | at a c
A | cg tg
c | cg cg
a | a a cg
cg c a cg
gc g | cg
a a a | gt
a c c | a a
c c g | g |
a a c | at
tg a | at
gc cg gc
gc ta gc
at cg tg
gc gc ta
aggatttttctccgaacttcacaccaaatcgcttccaaaccggccgtttgagcagatttggtgtgaagtgccgtctttttcgggggtgaacgggggtggcgcgctcaccaacgcccaccagccatcaacacatcggtgggagcagcaagaaaacgaagggtaacgtgaggggagcgtgtagttatgcaatcgaaaataccggaggtacaagcacATG
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