Gene putatively regulated by attenuation in C_glutamicum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:51 nt.     Distance to run of Ts=2 nt.   Size=27 nt.     Delta G= -7.30 kcal/mol
Antiterminator: Size=67 nt.     Delta G=-17.01 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TGGTGAGGCCAAAGTTGATGAACACATGCTCGCCGATCGTGGTGTTGAAGCCGTATTC
AATGATGGCTGGCGCTTTGATCGTGCAGGTTCCGCTGGCAGGATTTAGTACAGTTCTT
AGTATTTCGGCAGTTCGTGCGGGGTCTGTAGGTCCAATTTGGTTGTATTCGTGGAAAA
GTAACGCTGTTTTTTGTGCCACTTCTTCACGTTCCGCGCCGGTAGCCACGTACCAATC
GCCGCTGCTCATTTTCTCGATAGATTCAAAGTCATTGTCCATATCCTCCATtgtgcaggaga
actttaGTG

    NCgl0141


Gene: NCgl0141     GI: 19551394     BI number: NCgl0141     GOG: COG3145     Description: alkylated DNA repair protei


 TT
T  T
G  T
T  T
 CG
 GT
 CG
A  C
A  C
 TA
 GC
 AT
 AT
|  C
|  T
|  T
|  C
|  A
|  C
|  G
 AT
 AT
 GC
 GC         C
 TG       C  A
 GC       A  A
 CG       T  T
T  C       GC
T  C       CG
A  G      A  C
 TG       C  C
 GT        CG
 TA        GC
 TG        AT
 GC        TG
 GC        GC
 TA        GT
            CATTTTCTCGATAGATTCAAAGTCATTGTCCATATCCTCCATtgtgcaggagaactttaGTG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[L] COG3145 Alkylated DNA repair protein ... can be seen here

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