Gene putatively regulated by attenuation in C_glutamicum
Characteristics of the secondary structures
Terminator: Distance to gene:154 nt. Distance to run of Ts=1 nt. Size=26 nt. Delta G= -6.70 kcal/mol
Antiterminator: Size=46 nt. Delta G= -7.40 kcal/mol
Anti-antiterminator: Size=56 nt. Delta G= -9.12 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CGACAGTGAACGCAGCTACCGATTTAAGGAATGTGCTTTGGGTCACTTTCATctctcgagc
ctatcaaggaacttttatgtggggagatattttctgaaagaaaatttaattggtagaaacccatgattgggggcttgcatttgtttcgttgttcacctaa
agttaactctaggttaacaaaaagagttctcaaggtgaactcaagcgatcggtggaacatccactaacggggttaccaaaaatccttcgcggacactccc
gaaggaacacttcttgcgagaaggaaaggaagaagcactGTG
NCgl0917
Gene: NCgl0917 GI: 19552181 BI number: NCgl0917 GOG: NOG25166 Description: hypothetical protei
tc
a a
ta
cg
cg
| a
| a
gc
at
gt
| t
| t
| a
| t aa
| g g a
| t a a
| g at
cg at
tg gt
cg ta
ta c a
cg t t
Ta t t
| t tg ga
| a tg t t
| t at at
| t ta cg
| t a g cg
| t g a cg
| c a a a g
At g a a g
Cg gc a c
Ta gc gt
Ta gc at
Ta ta tg
Cg gt gc
atttgtttcgttgttcacctaaagttaactctaggttaacaaaaagagttctcaaggtgaactcaagcgatcggtggaacatccactaacggggttaccaaaaatccttcgcggacactcccgaaggaacacttcttgcgagaaggaaaggaagaagcactGTG
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