Gene putatively regulated by attenuation in C_glutamicum
Characteristics of the secondary structures
Terminator: Distance to gene:159 nt. Distance to run of Ts=3 nt. Size=30 nt. Delta G= -7.90 kcal/mol
Antiterminator: Size=47 nt. Delta G= -7.61 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GTCGCCGCCTGACGTGAGAGTAGCAATTCGCATGTCTTCCATattaaacccatcacaacacccgcgccg
gaacaatcacccaaaaataagagaatcacaggggttgacaggccaaaaaactgtctctgaccatcttatttaatcgccagagctgcagtttcattaacaa
atcgacattgtccgagcgggcatgtggtgtgctgcacaatttttggtcggacacatttttgcccccattgggttgtcggatcagatcaagaaaacccccg
cggaaaaattttgtctctagactggctcaccATG
NCgl1201
Gene: NCgl1201 GI: 19552470 BI number: NCgl1201 GOG: NOG15259 Description: hypothetical membrane protei
g
a a
a g
t a
a a
a t
a c
a a
a c a
c a a a
cg c a
cg c a
a | g a
cg gc
tg at
at cg
at at
cg gc
a a | t
a c | c
g a | t
g | tg
cg ta
cg gc
gc gc
atcttatttaatcgccagagctgcagtttcattaacaaatcgacattgtccgagcgggcatgtggtgtgctgcacaatttttggtcggacacatttttgcccccattgggttgtcggatcagatcaagaaaacccccgcggaaaaattttgtctctagactggctcaccATG
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