                                                                        Gene putatively regulated by attenuation in C_glutamicum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:149 nt.     Distance to run of Ts=2 nt.   Size=29 nt.     Delta G= -8.90 kcal/mol
Antiterminator: Size=34 nt.     Delta G= -3.80 kcal/mol
Anti-antiterminator:   Size=34 nt.     Delta G= -5.59 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTCTTTGTTGTAGACAATGGTGCCTCGGATAAAGATTCTTGGATGCTCCTCGTCAAGC
ACCACGTCTACCCATCGCAGGCTCAGTGCTTCCCATGCTCGCAACACTGTTCCAAGGC
AGACATCGACAACGTCGATGAGAGTCAATTGTTTTGAGGCCGCAATAACAGCGTGAAA
GGGTTGAATGTCAGCAACCTGCAGTGCTTGGGGCTCGTTGGTTTGTGCTTTTACAGGT
CGCACTTCAGCCATAGGGTTAACATGTACAAGCCCGTAGGGGGTTTCCCCACCGAGTT
CAGATTTGTCGTG

    NCgl1282 --- NCgl1283 Gene: NCgl1282     GI: 23308842     BI number: NCgl1282     GOG: COG5479     Description: hypothetical protein Gene: NCgl1283     GI: 19552554     BI number: NCgl1283     GOG: -------     Description: hypothetical protei            CA TG       C  A A  C      T  G C  T       TG         A C  C       GC       A  C C  G       TA        CG T  C       CG        AT T  A      A  A       GC C  A      C  C       CG GC       A  A       TA TA       A  T       AT GC       C  |       CG AT        GC       A  A CG        CG       G  G T  T       TA       A  A C  T      C  |       CG GC        GC        GT GC        TA        GC                         AATTGTTTTGAGGCCGCAATAACAGCGTGAAAGGGTTGAATGTCAGCAACCTGCAGTGCTTGGGGCTCGTTGGTTTGTGCTTTTACAGGTCGCACTTCAGCCATAGGGTTAACATGTACAAGCCCGTAGGGGGTTTCCCCACCGAGTTCAGATTTGTCGTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [M] COG5479 Uncharacterized protein potentially involved in peptidoglycan biosynthesis ... can be seen here     ..................................................................................................................