Gene putatively regulated by attenuation in C_burnetii

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:160 nt.     Distance to run of Ts=0 nt.   Size=21 nt.     Delta G= -6.10 kcal/mol
Antiterminator: Size=67 nt.     Delta G=-13.81 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GCCTTTCCTAATCTCATTGCCGCTGAAATTGCTGAAGCTTGTGAAAACTCACTCACCC
ACTCGACGACTCCTCCCGGTTATGCTCAGTTAAAATTGAATGAATTTTAAggaaatttccgtc
gcgagcgctcgggattttcttaaattcttaagaaaagattaaattacaaaaattatataaaattatttaaaaccctcctaaaataagcggcttataaaac
aagttcaactaaggcctgttgacaatttgttaggctgaattagaaacgtcaacagacctatgcttcatagcagtcaatcATG

    CBU0049 --- CBU0048


Gene: CBU0049     GI: 29653410     BI number: CBU0049     GOG: -------     Description: hypothetical protein
Gene: CBU0048     GI: 29653409     BI number: CBU0048     GOG: COG0845     Description: lipoprotein, putativ


 AA
T  A
 TA
 GT
 AT
 CG
 TA
C  A
G  T
T  G
A  |
 TA
 TA
 GT
 GT
C  T
C  T
C  A
 TA
 Cg
 Cg
 Ta
|  a
|  a
|  t
|  t
|  t
|  c       ag
|  c      g  c
 Cg        cg
 At        gc
 Gc       c  t
 Cg       t  |
A  |       gc
 Gc        cg
 Cg        cg
 Ta        tg
 Cg        ta
            ttttcttaaattcttaagaaaagattaaattacaaaaattatataaaattatttaaaaccctcctaaaataagcggcttataaaacaagttcaactaaggcctgttgacaatttgttaggctgaattagaaacgtcaacagacctatgcttcatagcagtcaatcATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[M] COG0845 Membrane-fusion protein ... can be seen here

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