                                                                        Gene putatively regulated by attenuation in C_burnetii

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:148 nt.     Distance to run of Ts=1 nt.   Size=37 nt.     Delta G=-20.30 kcal/mol
Antiterminator: Size=20 nt.     Delta G=-10.10 kcal/mol
Anti-antiterminator:   Size=36 nt.     Delta G= -7.80 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CGCCAGAGACAAGAGCGATGGGGCTTCCAAAGGGGAGCCATGCAAtactcccctttggtcggcgtta
gcgcgggttccccgcgcaggcgaaattcaaaATGGGAAAAATCTCGGTCGCTTATGGCCGAGACGCTTGCG
GCCGAGAGATTTTTAAAAATCAATCAGTTACGACATTATTCCGCCCCCTAAAGCCTTG
GAAAAATACCTCTTCGCATTAAgattaatttaacctccatccggtacacttaaggcaaatccctgaatcagtgaagcgtaatat
tgtaattgttggagatagtgATG

    CBU0128 --- CBU0129 Gene: CBU0128     GI: 29653486     BI number: CBU0128     GOG: -------     Description: hypothetical protein Gene: CBU0129     GI: 29653487     BI number: CBU0129     GOG: -------     Description: hypothetical protei AA A  A AT                  AG GC                 G  A GT                 C  C GC                  CG TG                  GC A  G                 GT a  |                T  T a  |                A  | a  |                T  | c  |                T  | t  |       TT        CG t  |      C  A       GC a  |       GT        CG a  |       CG        TG aT        TG        GC gC        GC        GC cG        GC        CG gC        CG        TA gT        TA        CG aT        CG        TA                         GATTTTTAAAAATCAATCAGTTACGACATTATTCCGCCCCCTAAAGCCTTGGAAAAATACCTCTTCGCATTAAgattaatttaacctccatccggtacacttaaggcaaatccctgaatcagtgaagcgtaatattgtaattgttggagatagtgATG     ..................................................................................................................