Gene putatively regulated by attenuation in C_burnetii
Characteristics of the secondary structures
Terminator: Distance to gene:40 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G= -7.30 kcal/mol
Antiterminator: Size=71 nt. Delta G=-12.81 kcal/mol
Anti-antiterminator: Size=28 nt. Delta G= -4.60 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GCGATTTTAAATGAaagggatcaggtactgaccctatcattacccacaatgggtaaagactaaaaacttaaacccaccaccccgcctccc
tcgtcatccccgcgcaggtgaggacccagcgtacggtgcgcagcgcgctaaaagcgcgcctggacttctgcgcggattacgaagtttaaaatggaaatcg
cgtccgtaccttaccttccattttataatcgtctcttaacgcagcgaatatttacgctacgttcttttttatagcataatacctggcagtgaaaaaacga
ggggttagtgGTG
CBU0210 --- CBU0211
Gene: CBU0211 GI: 29653564 BI number: CBU0211 GOG: ------- Description: hypothetical protein
Gene: CBU0212 GI: 29653565 BI number: CBU0212 GOG: ------- Description: hypothetical protei
g
c t
c a
t c
g c
c t
g t
c a
t c
a c
at
at
gc
gc
ta
at
at
at
at
ta
t t
t a
g a
a |
gg at
c a gc at
g t cg t t
c t at a t
g a | c a a
t c | t gc
cg | c cg
ta t t gc
ta t t at
cg a a c a
at g a gc
gt gc cg
gt cg at
ta gc at
cttttttatagcataatacctggcagtgaaaaaacgaggggttagtgGTG
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