                                                                        Gene putatively regulated by attenuation in C_burnetii

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:191 nt.     Distance to run of Ts=0 nt.   Size=40 nt.     Delta G=-19.30 kcal/mol
Antiterminator: Size=42 nt.     Delta G= -6.10 kcal/mol
Anti-antiterminator:   Size=32 nt.     Delta G= -4.14 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

tttctataaaagcgtaaactcacaatgagaacggacgcgccagaaaaagacccttcaggtaatggaagatctactcaggtaaagggattttacctgaggg
gtctttttttaacttcgtcaggatttgattttcgggattttgaaatagttaatgggacgggtgcgattgaaagtgtaggttttctaagccgcctcgggag
ccgagtagctaagtagcccaatgaaatggacccaccccttaaagacggcgtcataatgcgccaacatagaatttctattttcaaaaaaaggagaaggtcc
ATG

    CBU0384 Gene: CBU0384     GI: 29653731     BI number: CBU0384     GOG: COG3547     Description: IS1111A, transposas            ta           g  a        g           g  t      g  a           a  g       gt            cg        at ca        ta        at c  g       ta        at g  a       cg        ta G  a      c  a       gc T  a      c  |       gc A  a       at        at c  a       gc        cg cg        at        ta ta       a  a       cg gc       a  c      a  | gc       a  |       tg a  |       at        cg a  |       gc        tg gc       a  a       at at        cg        gc gt        cg        at gc        gt        at                         tttttaacttcgtcaggatttgattttcgggattttgaaatagttaatgggacgggtgcgattgaaagtgtaggttttctaagccgcctcgggagccgagtagctaagtagcccaatgaaatggacccaccccttaaagacggcgtcataatgcgccaacatagaatttctattttcaaaaaaaggagaaggtccATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [L] COG3547 Transposase and inactivated derivatives ... can be seen here     ..................................................................................................................