Gene putatively regulated by attenuation in C_burnetii

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:164 nt.     Distance to run of Ts=3 nt.   Size=31 nt.     Delta G= -9.10 kcal/mol
Antiterminator: Size=37 nt.     Delta G= -6.90 kcal/mol
Anti-antiterminator:   Size=41 nt.     Delta G=-15.80 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CTACGTGACCACGCTCACAAGCGAAATGGAGTGCTTGATACCCCTCTCTTGAGTCGAC
TACGAGAGGGTGTTCAATTAAAAGTTCCACAATATCTCGATAACCTTCCAAGGAAGCG
ATTTCGAGTGGTGTTTTATCTTCATATTTTTGATTGGGATCAATGTCCGTCCTTTGCA
ATATCCTTTCCATCTCACCGGGGGCATTATAGATACAAGCTTCAAATAGCCGCTGCAT
AGCTTCATCATTAATTTCACGCTGTCTCATttctttctctacctaattaaactttatgctagattctaTTG

    CBU0448


Gene: CBU0448     GI: 29653793     BI number: CBU0448     GOG: -------     Description: hypothetical protei


 CG
T  A
 GC
 AT         A
G  A      A  A
T  C      T  A
T  |       TG        AA
 CG        AT       C  G
 TA        AT        CG
 CG       C  C       TA
 TA       T  C       TA
 CG        TA        CG
 CG        GC       |  C
 CG        TA       C  G
|  T      G  A      A  A
 CG       G  T      A  T
 AT       G  A      T  T
T  |       AT        AT
 AT        GC        GC
 GC        AT        CG
 TA        GC        TA
 TA        CG        CG
                        TGGTGTTTTATCTTCATATTTTTGATTGGGATCAATGTCCGTCCTTTGCAATATCCTTTCCATCTCACCGGGGGCATTATAGATACAAGCTTCAAATAGCCGCTGCATAGCTTCATCATTAATTTCACGCTGTCTCATttctttctctacctaattaaactttatgctagattctaTTG
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