                                                                        Gene putatively regulated by attenuation in C_burnetii

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:204 nt.     Distance to run of Ts=1 nt.   Size=20 nt.     Delta G= -6.40 kcal/mol
Antiterminator: Size=44 nt.     Delta G= -7.50 kcal/mol
Anti-antiterminator:   Size=22 nt.     Delta G= -5.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TAATCAAATCCGCGAAGCGGTTAAACAACCGTATTACGTATTAGGCACCGACGGTTTT
GGGCGAAGTGACACGCGACCCGCTCTGCGTGATTTCTTTGAAGTCGACGCTAAAATGG
TAGTCTATACCGCATTGAAAGCGTTAGCGGATCAAAACGAATTTGAAAAGGATCAACT
CCTATCAGCCATGAAAAAACTAGGCATCGATCCTAACCGTCCCGACCCCTGGACCGTA
TAAgagtagcccgtatggagcgaagcgaaatacggggataacgaagtgggagtagaggagaaaacactGTG

    pdhC --- lpdA Gene: pdhC     GI: 29653806     BI number: CBU0462     GOG: COG0508     Description: pyruvate dehydrogenase, E2 component, dihydrolipoamide acetyltransferase Gene: lpdA     GI: 29653807     BI number: CBU0463     GOG: COG1249     Description: dihydrolipoamide dehydrogenas             G           G  T           C  T            AT            GT            CG            CG           A  |            CG            GC           G  G           A  A           T  A           T  | CG       A  | A  T      T  |       CG T  A      G  |      C  C T  T       CG       C  T AT        AT       A  C TA        TG        GT G  G       TA        CG CG       A  C       GC GC        TA        CG TA        GC        AT GC        CG        CG                         ATTTCTTTGAAGTCGACGCTAAAATGGTAGTCTATACCGCATTGAAAGCGTTAGCGGATCAAAACGAATTTGAAAAGGATCAACTCCTATCAGCCATGAAAAAACTAGGCATCGATCCTAACCGTCCCGACCCCTGGACCGTATAAgagtagcccgtatggagcgaagcgaaatacggggataacgaagtgggagtagaggagaaaacactGTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes ... can be seen here [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes ... can be seen here     ..................................................................................................................