                                                                        Gene putatively regulated by attenuation in C_burnetii

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:185 nt.     Distance to run of Ts=0 nt.   Size=26 nt.     Delta G= -6.80 kcal/mol
Antiterminator: Size=45 nt.     Delta G= -8.50 kcal/mol
Anti-antiterminator:   Size=55 nt.     Delta G= -8.24 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GGATTAGCAATTCGTGCATACACAGCGATTTCGGATAAATCCCGACACAACAGTGTAA
ACGGGTGGGCTTTATTTAATTGGCGTAGTCGGCGGATGCGTTCAGCCCCTGATTTGTT
TCCTAGCCCACACCCCAAAGCATACCCCGAATCGGTAGAATACGCGAGGATACCCCCT
GTCTTAACAGTTTCTACCGCCTGTTTAATCAGACGCGCCTGAGGGTTGTCGGGATGAA
TATGAATTGTCGCCATagcctaatgatagtatattacgagggacaaaaaagagaggctctttcaccttATG

    ispZ --- CBU0907 Gene: ispZ     GI: 29654231     BI number: CBU0908     GOG: COG2917     Description: intracellular septation protein A Gene: CBU0907     GI: 29654230     BI number: CBU0907     GOG: COG0271,COG2350     Description: bolA family protei   A A  A T  T A  C GC GC CG TA T  C       TT T  A      T  A A  C      A  A G  A      T  T C  A      T  T G  C       TG A  A       CG CG        GC AT       G  G        T CG        GT       T  C AT        TA       G  A |  A      G  G       CG |  A       GT        GC |  A       GC       T  | |  C       CG       A  | |  G      |  G       GC |  G      A  C       GC TG       A  G      C  | AT       A  G       GC CG        TA        GT G  G       GT        CG TG        TG        TA GC        GC        GT                         TTGTTTCCTAGCCCACACCCCAAAGCATACCCCGAATCGGTAGAATACGCGAGGATACCCCCTGTCTTAACAGTTTCTACCGCCTGTTTAATCAGACGCGCCTGAGGGTTGTCGGGATGAATATGAATTGTCGCCATagcctaatgatagtatattacgagggacaaaaaagagaggctctttcaccttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [D] COG2917 Intracellular septation protein A ... can be seen here [T] COG0271 Stress-induced morphogen (activity unknown) ... can be seen here [S] COG2350 Uncharacterized protein conserved in bacteria ... can be seen here     ..................................................................................................................