Gene putatively regulated by attenuation in C_burnetii
Characteristics of the secondary structures
Terminator: Distance to gene:184 nt. Distance to run of Ts=2 nt. Size=19 nt. Delta G= -7.10 kcal/mol
Antiterminator: Size=45 nt. Delta G=-11.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTACCGTATTAATTTATTATTTCATTACCAACCTTGCCGCTCTTCAGTTACCCAAAGC
CGATCGTCTTTATCCGCGGATATTTCCTGTTGGTGGGCTAATAGCTTGCTTATTTCTT
GCCTTTTGGGTGCCCCTGATGATTTGGTCAATTGGCATAGGCCTGATTGCTGTTGGAC
TTGCTTGGAAATATTTTATGGCTCGTTTATGGATATGAgcaatttttgaataggtggtgtatttatcagcaa
tgttatgctaatgtaaggactgctgttctagcgcaatagaaaggaggaggtcacTTG
CBU0952
Gene: CBU0952 GI: 29654269 BI number: CBU0952 GOG: ------- Description: hypothetical protei
GC
C G
CG
TA
AT
TA
T T
T T
C T
T C
G C
C T
TG
AT
GT A
CG A T
CG T A
GT CG
A | GC
A | GT
A | G T
CG T G
CG GC
CG GT
TATTTCTTGCCTTTTGGGTGCCCCTGATGATTTGGTCAATTGGCATAGGCCTGATTGCTGTTGGACTTGCTTGGAAATATTTTATGGCTCGTTTATGGATATGAgcaatttttgaataggtggtgtatttatcagcaatgttatgctaatgtaaggactgctgttctagcgcaatagaaaggaggaggtcacTTG
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