Gene putatively regulated by attenuation in C_burnetii
Characteristics of the secondary structures
Terminator: Distance to gene:27 nt. Distance to run of Ts=0 nt. Size=25 nt. Delta G= -7.10 kcal/mol
Antiterminator: Size=47 nt. Delta G=-17.40 kcal/mol
Anti-antiterminator: Size=76 nt. Delta G=-15.82 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CTTTCAGTTGGTGGCGTTGCCCGGCCAAATAGACGGTTACTTTCAATCCGTTTTCGTA
AGCCAAGCGCGCAAGCACTAGCCCGTCGCCCCCGTTATTCCCCTTCCCACAACATACG
GTAATTTCTTGAGCCTCGGGCCATCGCGCTAGAAGCGCTTTAAAAGCGGCCTCTCCGG
CGCGACACATTAATTCATATTCACTAATGCCCGATTCAACTGCCAAGCGCTCTAATTC
GCGAATTTGGCGGTTTTGGTACAATACTGTCATtcttttttctctatcattcttctaagcgcagtcgtTTG
CBU1089
Gene: CBU1089 GI: 29654396 BI number: CBU1089 GOG: ------- Description: hypothetical protei
CA
T T
TA
AT
AT
T C
T A
A C
C T
A A
C A
A |
GT
CG
GC
C | AA
GC T T
GC C T
CG T C
C A CG
T T GC
C T CG
T C | A
C A | A
C A G T
GC AT
GT AT
CG CG
GC CG T
A C GC G A
A | TG GC
A | CG TA
A | AT TA
T | AT T T
TA C | TA
TA T | GC
CG T | GT
GC AT CG
CG GT GT
GC CG GC
AT CG TA
TtcttttttctctatcattcttctaagcgcagtcgtTTG
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