Gene putatively regulated by attenuation in C_burnetii
Characteristics of the secondary structures
Terminator: Distance to gene:153 nt. Distance to run of Ts=2 nt. Size=30 nt. Delta G= -8.00 kcal/mol
Antiterminator: Size=43 nt. Delta G= -7.00 kcal/mol
Anti-antiterminator: Size=46 nt. Delta G=-12.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GGCCATATTATGAAACACAATGTCTTGTAAGTCAGGAATAATAAAATCATCCCTCCTT
TCTCCTTCGGAAGGGTTTGAGCGATTTTGGGTTTGCACTGATATATTCCCAGAAGAAT
TTCCTATCGGTGTGGCTTCTGTACTTTTTTGCTCTTCTTGCGTATCGATTGAGGGATC
GTGGTGTTTGAACATgaataaaacctccttggtttgaatccttatgtaataaggatatcaacgtttgcttaaaaaagtatgaaaaaaga
aggcttggctttattttttccctaaaagaatttcattGTG
CBU1115
Gene: CBU1115 GI: 29654422 BI number: CBU1115 GOG: ------- Description: hypothetical protei
T
C T
C C TG
TG C A
CG A T
TA C A
TA GT
TG TA
CG T T
CG T T AT
T T GC T C
C T GC CG
C T GC CG
CG TA T T
TA TG T G
| G TA T T
A C TA A G
CG | G A G
TA A A GC
AT G A AT
AT C T AT
AT GT GC
AT AT AT
TG GC CG
TACTTTTTTGCTCTTCTTGCGTATCGATTGAGGGATCGTGGTGTTTGAACATgaataaaacctccttggtttgaatccttatgtaataaggatatcaacgtttgcttaaaaaagtatgaaaaaagaaggcttggctttattttttccctaaaagaatttcattGTG
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