Gene putatively regulated by attenuation in C_burnetii
Characteristics of the secondary structures
Terminator: Distance to gene:170 nt. Distance to run of Ts=2 nt. Size=27 nt. Delta G=-12.30 kcal/mol
Antiterminator: Size=46 nt. Delta G=-10.10 kcal/mol
Anti-antiterminator: Size=46 nt. Delta G=-13.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CATTGCAAAACTTGCGATATTAAAGATCCTTCGCAAAATATTCGCTGGGTGGTGCCCG
AAGGTGGCGATGGGCCGAATTATTCTAATTTATGAATCCCCTCTCCCACAAGCGGGAG
AAGGACGGTTTTTCGGAAGGTCTTTAAAAAATCGTCGTTTTAATCCCAATTCCATGAA
GTTATTCTCTTGACTATAGATCTTTCTTGCAGTTAAATGCAAAACAATATTTAAAATA
TTGACGCTATCCTTCGTTTGATTTTTTATAATTCTCATtacattttaaaccattaaggcagattattgAT
G
CBU1122
Gene: CBU1122 GI: 29654429 BI number: CBU1122 GOG: ------- Description: enhanced entry protein EnhA, putativ
G
G T AA
T G T T
GC C T
GC T T
GC TA
T | AT
C | TG
G | TA
CG A A
TA AT
TA GC
A G C | AA
TG C | C G
AT GC A C
A G GC CG
A | GC CG
A | | T CG
CG T C TA
GC AT CG
CG GC TA
TA C | C A
T T GC C |
CG GC CG
CG TA CG
TG GC TA
CGGTTTTTCGGAAGGTCTTTAAAAAATCGTCGTTTTAATCCCAATTCCATGAAGTTATTCTCTTGACTATAGATCTTTCTTGCAGTTAAATGCAAAACAATATTTAAAATATTGACGCTATCCTTCGTTTGATTTTTTATAATTCTCATtacattttaaaccattaaggcagattattgATG
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