Gene putatively regulated by attenuation in C_burnetii
Characteristics of the secondary structures
Terminator: Distance to gene:114 nt. Distance to run of Ts=0 nt. Size=32 nt. Delta G= -8.70 kcal/mol
Antiterminator: Size=47 nt. Delta G= -9.00 kcal/mol
Anti-antiterminator: Size=51 nt. Delta G=-10.10 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AAAGGGGCTGAagcttgggcgggcgacgttcctttctatattacaagtaaccctttcatcgccaattgttacgctaaattagtcatccgatt
tattcaggattggattaacctgcaccctgaatcgagatacgaacctttttatgttttagagctgggggcgggaagtgggcaattcagcttttttgtatta
aaacaactaaactcccttcaaactcaattaaatttatcgcatcttaatatcaagtatgtaatgagtgatttcactgaaaataatgtgagtttttggcaaa
atcagaagATG
CBU1160
Gene: CBU1160 GI: 29654465 BI number: CBU1160 GOG: NOG41004 Description: TPR domain protei
t
t a
a a
gc
gc
| t
| g tt
t c t t
t a t a
a c c t
gc cg
gc at
at at
cg gt a
ta | t a g
t | c a g t
a | a g g g
t | t a g g
t | a g cg
ta gc gc
at at | a
gc g g g a
cg cg g t
| a tg gt
cg a g gc
ta a g ta
at gc cg
c | tg gc
ta cg at
gc cg gt
ttttgtattaaaacaactaaactcccttcaaactcaattaaatttatcgcatcttaatatcaagtatgtaatgagtgatttcactgaaaataatgtgagtttttggcaaaatcagaagATG
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