Gene putatively regulated by attenuation in C_burnetii
Characteristics of the secondary structures
Terminator: Distance to gene:153 nt. Distance to run of Ts=1 nt. Size=25 nt. Delta G=-12.50 kcal/mol
Antiterminator: Size=50 nt. Delta G= -3.55 kcal/mol
Anti-antiterminator: Size=58 nt. Delta G= -4.21 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATTGCTAATCAAAAATATTTAAAAGGCGAAGTTGTACCCCCCGAAAAAAGCGAACCCA
CCTACATTCGCGACCAAGTAACCCAAGCTCCTTTCACAAATAAAAATTGAtttttctggtcat
tcccacttccgtgggatggcatgttttaattaaattaattttaaaaaataaaatgctcataaatagaatttaattcaataaaatttttaaaataaattta
attttttcataatgtaggaattatatactaaattgaataattcaattttaatttttcaaaaacctgagaggaaagtaaaATG
CBU1370
Gene: CBU1370 GI: 29654667 BI number: CBU1370 GOG: ------- Description: hypothetical protei
CC
A T
C A
C C
C A
AT AC
AT C A
GC T A
CG T A
GC T T
A G C A
A A C A
A C T A
A C C A
A A G A
A A AT
G G AT
C T CG tc
C A C A t c
C A C t cg
C C At at
C C At cg
C C T t cg
A A G t cg
T | A c t |
G | At ta
TA Cg at
TG Cg cg
GC At tg
AT Gc gc
atgttttaattaaattaattttaaaaaataaaatgctcataaatagaatttaattcaataaaatttttaaaataaatttaattttttcataatgtaggaattatatactaaattgaataattcaattttaatttttcaaaaacctgagaggaaagtaaaATG
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