                                                                        Gene putatively regulated by attenuation in C_burnetii

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:190 nt.     Distance to run of Ts=3 nt.   Size=25 nt.     Delta G= -6.90 kcal/mol
Antiterminator: Size=42 nt.     Delta G= -6.60 kcal/mol
Anti-antiterminator:   Size=27 nt.     Delta G= -4.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

gcgcagtttgataacaaacgatagcagttaataaaatcagcagtcgtctaaggatttttgatagcaaggatttcatcagttgaccttcctttaactgatt
aactttttgaaagatagcagattttattactctagaacagtccaattgggatgtagcgattccccgtatttcgcttcgctccatacgggctacctgactc
catgattaaagtagaatacggaggaatcttattgttgacgcatggaataaaaagtataatgcaggccataattaactggttttagtatggtaggtgaaaa
ATG

    CBU1379 Gene: CBU1379     GI: 29654676     BI number: CBU1379     GOG: COG0515     Description: protein kinase, putativ            ta           a  g            gc            ta            ta            tg            tg            ta   t        at c  a       gt         t t  a       gt       t  c g  g      |  c      c  c cg       |  a      c  t ta       a  t       at gt       a  c       gt at        ta        ta c  t       cg        ta gt       t  t       gc at        gt        at cg        cg        cg ta        ta        ta at        gc        at                         taactttttgaaagatagcagattttattactctagaacagtccaattgggatgtagcgattccccgtatttcgcttcgctccatacgggctacctgactccatgattaaagtagaatacggaggaatcttattgttgacgcatggaataaaaagtataatgcaggccataattaactggttttagtatggtaggtgaaaaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [RTKL] COG0515 Serine/threonine protein kinase ... can be seen here     ..................................................................................................................