Gene putatively regulated by attenuation in C_burnetii
Characteristics of the secondary structures
Terminator: Distance from promoter:75 nt. Distance to gene:72 nt. Distance to run of Ts=2 nt. Size=18 nt. Delta G= -6.70 kcal/mol
Antiterminator: Distance from promoter:69 nt. Size=16 nt. Delta G= -3.30 kcal/mol
Anti-antiterminator: Distance from promoter:32 nt. Size=47 nt. Delta G= -8.00 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGCAA-TAATAT. It has a score value of 74.3 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGCAATATCAACACCCAGTATTTTAATATCTTTCATggaccttctcctttttttgaaaatagaaattctatg
ttggcgcattatgacgccgtctttaaggggtgggtccatttcattgggctacttttataaaaaagaatttcaaatgttaactttttcttaacttaaaagt
ggtaaactctttactaaaagggaggtttttATG
CBU1758
Gene: CBU1758 GI: 29655046 BI number: CBU1758 GOG: ------- Description: hypothetical protei
ta
t t
a g
c a
gc
cg
gc
gc
tg
| t
| c
| t
t t
gt
ta
a a
tg
cg tc
tg gt t a
tg g c t t
at gc at
| g ta cg
| g gt cg
a g gt tg
at gt gc
gc gc gt
acttttataaaaaagaatttcaaatgttaactttttcttaacttaaaagtggtaaactctttactaaaagggaggtttttATG
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