                                                                        Gene putatively regulated by attenuation in C_burnetii

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:184 nt.     Distance to run of Ts=0 nt.   Size=35 nt.     Delta G=-10.40 kcal/mol
Antiterminator: Size=69 nt.     Delta G=-35.00 kcal/mol
Anti-antiterminator:   Size=47 nt.     Delta G=-15.00 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GAGGGCTTTCACGGCCGAAGTCACGGGAATCCCGGCTAAGAGGGGCTTGAAGAACACt
aacggtgtttttcttagctccttaatctgggtccccccgactcggccgtgaaggttttgtattcttcaatactacagcagacggcctcgcgggaggacga
cggattttaagtttttcacgcttcaccacgggtgggtaatgataggggagcattgtgaaagggggcgctattgccaacacttccacctaggtggaaatta
aaataatattattttaaaagtgctattaaagtgaattagctgATG

    CBU1895 Gene: CBU1895     GI: 29655180     BI number: CBU1895     GOG: -------     Description: hypothetical protei             a           a  c           t  g            Cg            At            Cg            At            At            Gt            At            At            Gc           |  t CG       T  t A  G       Ta CG        Cg TA        Gc |  A       Gt G  T       Gc         c A  C       Gc       c  c A  C       At       c  c GC        Gt        cg CG       A  a       ta CG       A  a       gc GC       T  t       gt GT       C  |       gc C  A       Gc        tg A  A       Gt        cg CG        Cg       |  c TA        Cg       |  c TG        Cg       t  g TG       T  |      a  t CG       A  |      a  g G  G       At        ta GC        Gc        ta GT        Gc        cg AT        Gc        cg                         ttttgtattcttcaatactacagcagacggcctcgcgggaggacgacggattttaagtttttcacgcttcaccacgggtgggtaatgataggggagcattgtgaaagggggcgctattgccaacacttccacctaggtggaaattaaaataatattattttaaaagtgctattaaagtgaattagctgATG     ..................................................................................................................